🥯 New in GNPS2: The Everything Bagel Workflow
The Everything Bagel Workflow streamlines feature finding and feature-based molecular networking, making it easier to go from raw LC-MS/MS data to molecular networks.
Give it a try: Launch the Everything Bagel Workflow in GNPS2
📄 Read the preprint:
Shin Y, El Abiead Y, Jarmusch AK, et al.
The Everything Bagel Feature Finder: Ultra-fast automated feature
finding for untargeted metabolomics.
bioRxiv (2026).
https://doi.org/10.64898/2026.08.17.744735
GNPS2 Analysis Hub
Welcome to the GNPS2 Analysis Hub, a web-based mass spectrometry analysis platform. This is the central location for all GNPS2 tools and services.
GNPS2 is developed and maintained by the
Wang Bioinformatics Group
at UC Riverside. Please reach out if you have any questions and want to collaborate!
Workflows
- Workflow Server
- Explore Data
- Leverage Powerful Workflows
MASST Database
- Query All Public/Private Data
- Enrichment Analysis with Metadata
- Build Spectrum Context
Spectral Libraries
- Explore All Spectral Libraries
- Aggregated Public MS/MS spectra
- Visualize Spectra
Structure Dashboard
- Convert Structures
- Calculate Masses
Virtual Office Hours
- Interactive Feedback
- Free For Community
Public Tasks
- View All Public Tasks
- Shared Analyses
Spectrum Resolver
- View MS/MS Spectra
- Compare MS/MS Spectra
GNPS2 Dashboard
- View Full LCMS/GCMS
- Interactive in Web
Advanced Viz Tools
- Data Viz Dashboards
- Custom Data Selection
