flow_filelinking.yaml 0000644 0000000 0000000 00000000141 14730072366 013766 0 ustar root root - parameter: input_spectra
target: input_spectra/240820_posGlcA_standards_single_adduct_v2.mgf
input_spectra/ 0000755 0000000 0000000 00000000000 14730072366 012444 5 ustar root root input_spectra/240820_posGlcA_standards_single_adduct_v2.mgf 0000777 0000000 0000000 00000000000 14730072366 042337 2/data/nf_data/useruploads/nrb5391/myLibs/240820_posGlcA_standards_single_adduct_v2.mgf ustar root root job_dag.html 0000644 0000000 0000000 00000014513 14730072406 012036 0 ustar root root
Nextflow Cytoscape.js with Dagre
Nextflow Cytoscape.js with Dagre
job_parameters.yaml 0000644 0000000 0000000 00000002273 14730072366 013451 0 ustar root root OMETAFLOW_SERVER: http://ometaflow-launchserver:4000
OMETALIBRARY_SERVER: http://ometalibrary-web:5000/library
OMETAMASST_SERVER: http://ometamasst-web:5000/masst
OMETATASK: df017bedaaef47ee96c0b4f1e1c31a73
OMETAUSER: nrb5391
create_time: 2024-12-16 10:39:25 PST-0800
description: pos_GlcA_standards_NLs
extract: 'NO'
extractnaming: condensed
input_spectra: /data/nf_data/server/nf_tasks/df017bedaaef47ee96c0b4f1e1c31a73/input_spectra
max_extracted_scans: '10000'
maxfilesize: '300'
parallel_files: 'YES'
publishdir: /data/nf_data/server/nf_tasks/df017bedaaef47ee96c0b4f1e1c31a73
query: QUERY scaninfo(MS2DATA) WHERE MS2NL=176.0321:TOLERANCEMZ=0.003 ||| QUERY scaninfo(MS2DATA)
WHERE MS2NL=194.0425:TOLERANCEMZ=0.003 ||| QUERY scaninfo(MS2DATA) WHERE MS2NL=(176.0321
OR 194.0425):TOLERANCEMZ=0.003 ||| QUERY scaninfo(MS2DATA) WHERE MS2NL=176.0321:INTENSITYPERCENT=5:TOLERANCEMZ=0.003
||| QUERY scaninfo(MS2DATA) WHERE MS2NL=194.0425:INTENSITYPERCENT=5:TOLERANCEMZ=0.003
||| QUERY scaninfo(MS2DATA) WHERE MS2NL=(176.0321 OR 194.0425):INTENSITYPERCENT=5:TOLERANCEMZ=0.003
task: df017bedaaef47ee96c0b4f1e1c31a73
usi: ''
workflow_version: SERVER:2024.09.17;WORKFLOW:2024.08.21
workflowname: massql_workflow
job_report.html 0000644 0000000 0000000 00013146332 14730072406 012627 0 ustar root root
[extravagant_laplace] Nextflow Workflow Report
Nextflow Report
Nextflow workflow report
[extravagant_laplace]
Workflow execution completed successfully!
Run times
16-Dec-2024 18:39:28 - 16-Dec-2024 18:39:41
( duration: 12.8s )
5 succeeded
0 cached
0 ignored
0 failed
Nextflow command
nextflow run /app/workflows_user/massql_workflow/nf_workflow.nf -params-file /data/nf_data/server/nf_tasks/df017bedaaef47ee96c0b4f1e1c31a73/job_parameters.yaml -w /data/nf_data/server/nf_work/df017bedaaef47ee96c0b4f1e1c31a73 -with-report /data/nf_data/server/nf_tasks/df017bedaaef47ee96c0b4f1e1c31a73/job_report.html -with-timeline /data/nf_data/server/nf_tasks/df017bedaaef47ee96c0b4f1e1c31a73/job_timeline.html -with-dag /data/nf_data/server/nf_tasks/df017bedaaef47ee96c0b4f1e1c31a73/job_dag.html -with-weblog 'http://localhost:4000/nf_weblog/df017bedaaef47ee96c0b4f1e1c31a73' -c /app/launchserver/nextflow.config
CPU-Hours
(a few seconds)
Launch directory
/data/nf_data/server/nf_tasks/df017bedaaef47ee96c0b4f1e1c31a73
Work directory
/data/nf_data/server/nf_work/df017bedaaef47ee96c0b4f1e1c31a73
Project directory
/app/workflows_user/massql_workflow
Script name
nf_workflow.nf
Script ID
4e3ef112b15252b8d66c9d5e63df6fd1
Workflow session
4b230b9f-e65e-4aaf-a0a6-aae423686c9a
Workflow profile
standard
Nextflow version
version 21.10.0, build 5640 (11-11-2021 18:27 UTC)
Resource Usage
These plots give an overview of the distribution of resource usage for each process.
CPU
Memory
Tasks
This table shows information about each task in the workflow. Use the search box on the right
to filter rows for specific values. Clicking headers will sort the table by that value and
scrolling side to side will reveal more columns.
(tasks table omitted because the dataset is too big)
job_timeline.html 0000644 0000000 0000000 00000756230 14730072406 013122 0 ustar root root
Processes execution timeline
Launch time:
Elapsed time:
Legend: job wall time / memory usage (RAM)
nextflow_stdout.log 0000644 0000000 0000000 00000006373 14730072406 013543 0 ustar root root N E X T F L O W ~ version 21.10.0
Launching `/app/workflows_user/massql_workflow/nf_workflow.nf` [extravagant_laplace] - revision: 4e3ef112b1
[- ] process > validateQuery -
[- ] process > prepInputFiles -
[- ] process > queryData -
[- ] process > formatResultsMergeRounds -
[- ] process > validateQuery [ 0%] 0 of 1
[- ] process > prepInputFiles [ 0%] 0 of 1
[- ] process > queryData -
[- ] process > formatResultsMergeRounds -
[- ] process > summarizeResults -
executor > local (2)
[c7/e466a7] process > validateQuery [ 0%] 0 of 1
[db/27c0d8] process > prepInputFiles (1) [ 0%] 0 of 1
[- ] process > queryData -
[- ] process > formatResultsMergeRounds -
[- ] process > summarizeResults -
executor > local (2)
[c7/e466a7] process > validateQuery [ 0%] 0 of 1
[db/27c0d8] process > prepInputFiles (1) [100%] 1 of 1 ✔
[- ] process > queryData -
[- ] process > formatResultsMergeRounds -
[- ] process > summarizeResults -
executor > local (3)
[c7/e466a7] process > validateQuery [100%] 1 of 1 ✔
[db/27c0d8] process > prepInputFiles (1) [100%] 1 of 1 ✔
[b6/b651dc] process > queryData (1) [ 0%] 0 of 1
[- ] process > formatResultsMergeRounds -
[- ] process > summarizeResults -
executor > local (4)
[c7/e466a7] process > validateQuery [100%] 1 of 1 ✔
[db/27c0d8] process > prepInputFiles (1) [100%] 1 of 1 ✔
[b6/b651dc] process > queryData (1) [100%] 1 of 1 ✔
[60/17ba39] process > formatResultsMergeRounds (1) [ 0%] 0 of 1
[- ] process > summarizeResults -
executor > local (5)
[c7/e466a7] process > validateQuery [100%] 1 of 1 ✔
[db/27c0d8] process > prepInputFiles (1) [100%] 1 of 1 ✔
[b6/b651dc] process > queryData (1) [100%] 1 of 1 ✔
[60/17ba39] process > formatResultsMergeRounds (1) [100%] 1 of 1 ✔
[6d/20d826] process > summarizeResults (1) [ 0%] 0 of 1
executor > local (5)
[c7/e466a7] process > validateQuery [100%] 1 of 1 ✔
[db/27c0d8] process > prepInputFiles (1) [100%] 1 of 1 ✔
[b6/b651dc] process > queryData (1) [100%] 1 of 1 ✔
[60/17ba39] process > formatResultsMergeRounds (1) [100%] 1 of 1 ✔
[6d/20d826] process > summarizeResults (1) [ 0%] 0 of 1
executor > local (5)
[c7/e466a7] process > validateQuery [100%] 1 of 1 ✔
[db/27c0d8] process > prepInputFiles (1) [100%] 1 of 1 ✔
[b6/b651dc] process > queryData (1) [100%] 1 of 1 ✔
[60/17ba39] process > formatResultsMergeRounds (1) [100%] 1 of 1 ✔
[6d/20d826] process > summarizeResults (1) [100%] 1 of 1 ✔
executor > local (5)
[c7/e466a7] process > validateQuery [100%] 1 of 1 ✔
[db/27c0d8] process > prepInputFiles (1) [100%] 1 of 1 ✔
[b6/b651dc] process > queryData (1) [100%] 1 of 1 ✔
[60/17ba39] process > formatResultsMergeRounds (1) [100%] 1 of 1 ✔
[6d/20d826] process > summarizeResults (1) [100%] 1 of 1 ✔
nf_cmd.sh 0000644 0000000 0000000 00000001145 14730072366 011347 0 ustar root root nextflow run /app/workflows_user/massql_workflow/nf_workflow.nf -params-file /data/nf_data/server/nf_tasks/df017bedaaef47ee96c0b4f1e1c31a73/job_parameters.yaml -w /data/nf_data/server/nf_work/df017bedaaef47ee96c0b4f1e1c31a73 -with-report /data/nf_data/server/nf_tasks/df017bedaaef47ee96c0b4f1e1c31a73/job_report.html -with-timeline /data/nf_data/server/nf_tasks/df017bedaaef47ee96c0b4f1e1c31a73/job_timeline.html -with-dag /data/nf_data/server/nf_tasks/df017bedaaef47ee96c0b4f1e1c31a73/job_dag.html -with-weblog http://localhost:4000/nf_weblog/df017bedaaef47ee96c0b4f1e1c31a73 -c /app/launchserver/nextflow.config nf_output/ 0000755 0000000 0000000 00000000000 14730072405 011601 5 ustar root root nf_output/summary/ 0000755 0000000 0000000 00000000000 14730072405 013276 5 ustar root root nf_output/summary/summary.html 0000644 0000000 0000000 00000031330 14730072405 015661 0 ustar root root