Workflow execution completed unsuccessfully!
The exit status of the task that caused the workflow execution to fail was: 1.
The full error message was:
Error executing process > 'enrichClusterSummary (1)'
Caused by:
Process `enrichClusterSummary (1)` terminated with an error exit status (1)
Command executed:
python /app/workflows_user/feature_based_molecular_networking_workflow/bin/scripts/enrich_cluster_summary.py clustersummary_with_groups.tsv filtered_pairs.tsv merged_results_with_gnps.tsv clustersummary_with_network.tsv
Command exit status:
1
Command output:
(empty)
Command error:
Traceback (most recent call last):
File "/app/workflows_user/feature_based_molecular_networking_workflow/bin/scripts/enrich_cluster_summary.py", line 70, in
main()
File "/app/workflows_user/feature_based_molecular_networking_workflow/bin/scripts/enrich_cluster_summary.py", line 27, in main
df_filtered_pairs = pd.read_csv(args.input_filtered_pairs, sep='\t')
File "/app/launchserver/env/conda_envs/conda_env-1481db6234eceaa7db05ba6454e78bde/lib/python3.8/site-packages/pandas/io/parsers/readers.py", line 912, in read_csv
return _read(filepath_or_buffer, kwds)
File "/app/launchserver/env/conda_envs/conda_env-1481db6234eceaa7db05ba6454e78bde/lib/python3.8/site-packages/pandas/io/parsers/readers.py", line 577, in _read
parser = TextFileReader(filepath_or_buffer, **kwds)
File "/app/launchserver/env/conda_envs/conda_env-1481db6234eceaa7db05ba6454e78bde/lib/python3.8/site-packages/pandas/io/parsers/readers.py", line 1407, in __init__
self._engine = self._make_engine(f, self.engine)
File "/app/launchserver/env/conda_envs/conda_env-1481db6234eceaa7db05ba6454e78bde/lib/python3.8/site-packages/pandas/io/parsers/readers.py", line 1679, in _make_engine
return mapping[engine](f, **self.options)
File "/app/launchserver/env/conda_envs/conda_env-1481db6234eceaa7db05ba6454e78bde/lib/python3.8/site-packages/pandas/io/parsers/c_parser_wrapper.py", line 93, in __init__
self._reader = parsers.TextReader(src, **kwds)
File "pandas/_libs/parsers.pyx", line 557, in pandas._libs.parsers.TextReader.__cinit__
pandas.errors.EmptyDataError: No columns to parse from file
Work dir:
/data/nf_data/server/nf_work/4cc24485b44d484f85790a985b993faa/db/7a743134ebc76ec16b293f33a75899
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`